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组学技术平台成果(部分)
来源: | 作者:shchgc | 发布时间: 2019-08-27 | 306 次浏览 | 分享到:

组学平台主持或合作项目代表性论文(按时间顺序)

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2.          Wang Xuezhi,et al. Identification and evaluation of the novel immunodominant antigen Rv2351c from Mycobacterium tuberculosis. Emerg Microbes Infect. 2017;6(6):e48.

3.          Gong Hongli, et al. Alterations of microbiota structure in the larynx relevant to laryngeal carcinoma. Sci Rep. 2017; 7(1):5507.

4.          Gong Hongli, et al. Composition and abundance of microbiota in the pharynx in patients with laryngeal carcinoma and vocal cord polyps. J Microbiol. 2017; 55(8):648-654.

5.          Dong Hui, et al. Small surface antigen variants of HBV associated with responses to telbivudine treatment in chronic hepatitis B patients. Antivir Ther. 2017; 22(1):43-51.

6.          Li Yuan, et al. Changes in pathogenicity and immunogenicity of Mycoplasma mycoides subsp. mycoides strains revealed by comparative genomics analysis.Scientific Reports2016619081.

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8.          Chen Ping, et al. Diversity, Biogeography, and Biodegradation Potential of Actinobacteria in the Deep-Sea Sediments along the Southwest Indian Ridge. Front Microbiol. 2016; 7:1340.

9.          Zheng Huajun, et al. Altered Gut Microbiota Composition Associated with Eczema in Infants. PLoS One. 2016, 11(11): e0166026.

10.       Zhu Zijue, et al. Dynamics of the Transcriptome during Human Spermatogenesis: Predicting the Potential Key Genes Regulating Male Gametes Generation. Sci Rep. 2016; 6:19069.

11.       Liu Yuanfang, et al. Genomic Profiling of Adult and Pediatric B-cell Acute Lymphoblastic Leukemia. EBioMedicine. 2016; 8:173-183.

12.       Li Zhiyong, et al. Metagenomic Analysis of Genes Encoding Nutrient Cycling Pathways in the Microbiota of Deep-Sea and Shallow-Water Sponges. Mar Biotechnol (NY). 2016; 18(6):659-671.

13.       Liu Canying, et al. Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033. BMC Genomics. 2015;16:717.

14.       Zhu Zhengang, et al. Complete genome sequence of a malodorant-producing acetogen, Clostridium scatologenes ATCC 25775(T). J Biotechnol. 2015;212:19-20.

15.       Liu Chenjian, et al. Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean. Genomics. 2015;106(6):404-11.

16.       Tan Yang, et al. Comparative transcriptome analysis between csrA-disruption Clostridium acetobutylicum and its parent strain. Mol Biosyst. 2015;11(5):1434-42.

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18.       Ling Zongxin, et al. Decreased Diversity of the Oral Microbiota of Patients with Hepatitis B Virus-Induced Chronic Liver Disease: A Pilot Project. Sci Rep. 2015; 5:17098.

19.       Shi Yuanyuan, et al. Differentially expressed microRNAs between queen and worker larvae of the honey bee (Apis mellifera). Apidologie. 2015, 46(1): 36-45.

20.       Li Benshang, et al. Negative feedback-defective PRPS1 mutants drive thiopurine resistance in relapsed childhood ALL. Nat Med. 2015; 21(6):563-71.

21.       Yu Xianjun, et al. Characterization of Somatic Mutations in Air Pollution-Related Lung Cancer. EBioMedicine. 2015; 2(6):583-90.

22.       Huang Jian, et al. Exome sequencing of hepatitis B virus-associated hepatocellular carcinoma. Nat Genet. 2012; 44(10):1117-21.

23.       Liu xia, et al. Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites. Sci Rep. 2015; 5: 14139.

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25.       Ye Run, et al. Transcription of the var genes from a freshly-obtained field isolate of Plasmodium falciparum shows more variable switching patterns than long laboratory-adapted isolates. Malar J. 2015; 14:66.

26.       Zhou Bin, et al. Composition and Interactions of Hepatitis B Virus Quasispecies Defined the Virological Response During Telbivudine Therapy. Sci Rep. 2015; 5:17123.

27.       Wang Xiangru, et al. Plasmid-mediated multidrug resistance and virulence in an avian pathogenic Escherichia coli strain isolated in China. J Glob Antimicrob Resist. 2014;2(1):57-58.

28.       Gong Hongli, et al. Microbiota in the Throat and Risk Factors for Laryngeal Carcinoma. Appl Environ Microbiol. 2014; 80(23):7356-63.

29.       Bai Yun, et al. Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus. BMC Genomics. 2014; 15:736.

30.       Li Zhiyong, et al. Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi indicated by metagenomics. Sci Rep. 2014; 4:3895.

31.       Wang Fangkun, et al. Comparison of genomes of Brucella melitensis M28 and the B. melitensis M5-90 derivative vaccine strain highlights the translation elongation factor Tu gene tuf2 as an attenuation-related gene. Infect Immun. 2013; 81(8):2812-8.

32.       Jiang Yi et al.19-VNTR loci used in genotyping Chinese clinical Mycobacterium tuberculosis complex strains and in association with spoligotyping. Journal of Basic Microbiology. 2013, 53(7)562-580. 

33.       Zhang Wen, et al. Genome Sequencing and Analysis of BCG Vaccine StrainsPLoS ONE. 2013, 8(8)e71243.

34.       Wang Sen, et al. Revealing of Mycobacterium marinum transcriptome by RNA-seq. PLoS One. 2013; 8(9):e75828.

35.       Tan Yang, et al. RNA-seq-based comparative transcriptome analysis of the syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528 grown autotrophically and heterotrophically. Mol Biosyst. 2013; 9(11):2775-84.

36.       Wu Na, et al. Dysbiosis signature of fecal microbiota in colorectal cancer patients. Microb Ecol. 2013; 66(2):462-70.

37.       Zhang Chenhong, et al. Structural modulation of gut microbiota in life-long calorie-restricted mice. Nat Commun. 2013; 4:2163.

38.       Chen Shuangyan, et al. Transcriptome analysis in sheepgrass (Leymus chinensis): a dominant perennial grass of the Eurasian Steppe. PLoS One. 2013; 8(7):e67974.

39.       Zheng Huajun, et al. The genome of the hydatid tapeworm Echinococcus granulosus. Nat Genet. 2013; 45(10): 1168-1175.

40.       Yan Xing, et al. Discovery of (hemi-) cellulase genes in a metagenomic library from a biogas digester using 454 pyrosequencing. Appl Microbiol Biotechnol. 2013; 97(18):8173-82.

41.       Sun Gang,et al. Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients. J Infect Dis. 2012, 206(11):1724-33.

42.       Lei Fang, et al. Higher-level production of volatile fatty acids in vitro by chicken gut microbiotas than by human gut microbiotas as determined by functional analyses. Appl Environ Microbiol. 2012; 78(16):5763-72.

43.       Guo Junjie, et al. Sensitive and Specific Target Sequences Selected from Retrotransposons of Schistosoma japonicum for the Diagnosis of Schistosomiasis. PLoS Negl Trop Dis. 2012; 6(3): e1579.

44.       Xie Lei, et al. Profiling the metatranscriptome of the protistan community in Coptotermes formosanus with emphasis on the lignocellulolytic system. Genomics. 2012; 99(4):246-55.

45.       Zhong Yi, et al. Comparative proteogenomic analysis of the Leptospira interrogans virulence-attenuated strain IPAV against the pathogenic strain 56601. Cell Res. 2011; 21(8):1210-29.

46.       Guo Li, et al. Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol. 2011; 193(7):1672-80.

47.       Mi Shuang, et al. Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation. J Microbiol. 2011; 49(6):890-901.

48.       On On Lee, et al. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. ISME J. 2011; 5(4): 650–664.

49.       Chen Yanfei, et al. Characterization of fecal microbial communities in patients with liver cirrhosis. Hepatology. 2011; 54(2):562-72.

50.       Zheng Huajun, et al. Global identification of transcription start sites in the genome of Apis mellifera using 5'LongSAGE. J Exp Zool B Mol Dev Evol.2011; 316(7)500-514.

51.       Chen Yafeng, et al. Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome. Virology. 2011; 414(1):42-50.

52.       Liu Ning, et al. Microbiome of fungus-growing termites: a new reservoir for lignocellulase genes. Appl Environ Microbiol. 2011; 77(1):48-56.

53.       Dong Hui, et al. Digital karyotyping reveals probable target genes at 7q21.3 locus in hepatocellular carcinoma. BMC Med Genomics. 2011; 4: 60.

54.       Zhao Wei, et al. Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Res. 2010;20(10):1096-108.

55.       Zhang Fujing, et al. Massively parallel pyrosequencing-based transcriptome analyses of small brown planthopper (Laodelphax striatellus), a vector insect transmitting rice stripe virus (RSV). BMC Genomics. 2010; 11:303.

56.       Zhang Chenhong, et al. Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice. ISME J. 2010; 4(2):232-41.

57.       Ling Zongxin, et al. Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing. Microb Ecol. 2010; 60(3):677-90.

58.       Ma Yingfei, et al. The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. Appl Environ Microbiol. 2009;75(21):6812-9.

59.       Li Min, et al. Molecular diversity of Bacteroides spp. in human fecal microbiota as determined by group-specific 16S rRNA gene clone library analysis. Syst Appl Microbiol. 2009; 32(3):193-200.

60.       Zhou Yan, et al. The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature. 2009; 460(7253):345-51.

61.       Brejová B, et al. Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence. Nucleic Acids Res. 2009; 37(7):e52.

62.       Li Min, et al. Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci U S A. 2008; 105(6):2117-22.

63.       Chutiwitoonchai N, et al. Opisthorchis viverrini: Gene expression profiling of carcinogenic adult liver fluke worms using 5' SAGE. Exp Parasitol. 2008; 120(4):306-13.

64.       Ren Wuze, et al. Full-length genome sequences of two SARS-like coronaviruses in horseshoe bats and genetic variation analysis. J Gen Virol. 2006; 87(Pt 11):3355-9.

65.       Qian Wei, et al. Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res. 2005; 15(6):757-67.

66.       Song Huaidong, et al. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci U S A. 2005; 102(7):2430-5.

67.       Chinese SARS Molecular Epidemiology Consortium. Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China. Science. 2004; 303(5664):1666-9.

68.       Watanabe H, et al. DNA sequence and comparative analysis of chimpanzee chromosome 22. Nature. 2004; 429(6990):382-8.

69.       Zhang Yueqing, et al. Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Molecular Microbiology. 2003; 49(6): 1577–1593.

70.        Ren Shuangxi, et al. Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature. 2003; 422(6934):888-93.

71.       Feng Qi, et al. Sequence and analysis of rice chromosome 4. Nature. 2002; 420(6913):316-20.

72.       Zhao Qiang, et al. A fine physical map of the rice chromosome 4. Genome Res. 2002; 12(5):817-23.