组学平台主持或合作项目代表性论文(按时间顺序)

1.          Xu Yinghua，et al. Genomic Analysis of a New Serovar of Leptospira weilii Serogroup Manhao. Frontiers in Microbiology, 2017，8：149

2.          Wang Xuezhi,et al. Identification and evaluation of the novel immunodominant antigen Rv2351c from Mycobacterium tuberculosis. Emerg Microbes Infect. 2017;6(6):e48.

3.          Gong Hongli, et al. Alterations of microbiota structure in the larynx relevant to laryngeal carcinoma. Sci Rep. 2017; 7(1):5507.

4.          Gong Hongli, et al. Composition and abundance of microbiota in the pharynx in patients with laryngeal carcinoma and vocal cord polyps. J Microbiol. 2017; 55(8):648-654.

5.          Dong Hui, et al. Small surface antigen variants of HBV associated with responses to telbivudine treatment in chronic hepatitis B patients. Antivir Ther. 2017; 22(1):43-51.

6.          Li Yuan, et al. Changes in pathogenicity and immunogenicity of Mycoplasma mycoides subsp. mycoides strains revealed by comparative genomics analysis.，Scientific Reports，2016，6：19081.

7.          Zheng Huajun, et al. Strand-specific RNA-seq analysis of the Lactobacillus delbrueckii subsp. bulgaricus transcriptome. Molecular BioSystems. 2016, 12(2): 508-519.

8.          Chen Ping, et al. Diversity, Biogeography, and Biodegradation Potential of Actinobacteria in the Deep-Sea Sediments along the Southwest Indian Ridge. Front Microbiol. 2016; 7:1340.

9.          Zheng Huajun, et al. Altered Gut Microbiota Composition Associated with Eczema in Infants. PLoS One. 2016, 11(11): e0166026.

10.       Zhu Zijue, et al. Dynamics of the Transcriptome during Human Spermatogenesis: Predicting the Potential Key Genes Regulating Male Gametes Generation. Sci Rep. 2016; 6:19069.

11.       Liu Yuanfang, et al. Genomic Profiling of Adult and Pediatric B-cell Acute Lymphoblastic Leukemia. EBioMedicine. 2016; 8:173-183.

12.       Li Zhiyong, et al. Metagenomic Analysis of Genes Encoding Nutrient Cycling Pathways in the Microbiota of Deep-Sea and Shallow-Water Sponges. Mar Biotechnol (NY). 2016; 18(6):659-671.

13.       Liu Canying, et al. Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033. BMC Genomics. 2015;16:717.

14.       Zhu Zhengang, et al. Complete genome sequence of a malodorant-producing acetogen, Clostridium scatologenes ATCC 25775(T). J Biotechnol. 2015;212:19-20.

15.       Liu Chenjian, et al. Complete genome sequences and comparative genome analysis of Lactobacillus plantarum strain 5-2 isolated from fermented soybean. Genomics. 2015;106(6):404-11.

16.       Tan Yang, et al. Comparative transcriptome analysis between csrA-disruption Clostridium acetobutylicum and its parent strain. Mol Biosyst. 2015;11(5):1434-42.

17.       Dai Xin, et al. Metatranscriptomic analyses of plant cell wall polysaccharide degradation by microorganisms in the cow rumen. Appl Environ Microbiol. 2015;81(4):1375-86.

18.       Ling Zongxin, et al. Decreased Diversity of the Oral Microbiota of Patients with Hepatitis B Virus-Induced Chronic Liver Disease: A Pilot Project. Sci Rep. 2015; 5:17098.

19.       Shi Yuanyuan, et al. Differentially expressed microRNAs between queen and worker larvae of the honey bee (Apis mellifera). Apidologie. 2015, 46(1): 36-45.

20.       Li Benshang, et al. Negative feedback-defective PRPS1 mutants drive thiopurine resistance in relapsed childhood ALL. Nat Med. 2015; 21(6):563-71.

21.       Yu Xianjun, et al. Characterization of Somatic Mutations in Air Pollution-Related Lung Cancer. EBioMedicine. 2015; 2(6):583-90.

22.       Huang Jian, et al. Exome sequencing of hepatitis B virus-associated hepatocellular carcinoma. Nat Genet. 2012; 44(10):1117-21.

23.       Liu xia, et al. Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites. Sci Rep. 2015; 5: 14139.

24.       Duan Qianglin, et al. Characterization of immune cells and perforin mutations in familiar venous thromboembolism. Int J Clin Exp Med. 2015; 8(5):7951-7.

25.       Ye Run, et al. Transcription of the var genes from a freshly-obtained field isolate of Plasmodium falciparum shows more variable switching patterns than long laboratory-adapted isolates. Malar J. 2015; 14:66.

26.       Zhou Bin, et al. Composition and Interactions of Hepatitis B Virus Quasispecies Defined the Virological Response During Telbivudine Therapy. Sci Rep. 2015; 5:17123.

27.       Wang Xiangru, et al. Plasmid-mediated multidrug resistance and virulence in an avian pathogenic Escherichia coli strain isolated in China. J Glob Antimicrob Resist. 2014;2(1):57-58.

28.       Gong Hongli, et al. Microbiota in the Throat and Risk Factors for Laryngeal Carcinoma. Appl Environ Microbiol. 2014; 80(23):7356-63.

29.       Bai Yun, et al. Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus. BMC Genomics. 2014; 15:736.

30.       Li Zhiyong, et al. Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi indicated by metagenomics. Sci Rep. 2014; 4:3895.

31.       Wang Fangkun, et al. Comparison of genomes of Brucella melitensis M28 and the B. melitensis M5-90 derivative vaccine strain highlights the translation elongation factor Tu gene tuf2 as an attenuation-related gene. Infect Immun. 2013; 81(8):2812-8.

32.       Jiang Yi et al.19-VNTR loci used in genotyping Chinese clinical Mycobacterium tuberculosis complex strains and in association with spoligotyping. Journal of Basic Microbiology. 2013, 53(7)：562-580. 

33.       Zhang Wen, et al. Genome Sequencing and Analysis of BCG Vaccine Strains，PLoS ONE. 2013, 8(8)：e71243.

34.       Wang Sen, et al. Revealing of Mycobacterium marinum transcriptome by RNA-seq. PLoS One. 2013; 8(9):e75828.

35.       Tan Yang, et al. RNA-seq-based comparative transcriptome analysis of the syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528 grown autotrophically and heterotrophically. Mol Biosyst. 2013; 9(11):2775-84.

36.       Wu Na, et al. Dysbiosis signature of fecal microbiota in colorectal cancer patients. Microb Ecol. 2013; 66(2):462-70.

37.       Zhang Chenhong, et al. Structural modulation of gut microbiota in life-long calorie-restricted mice. Nat Commun. 2013; 4:2163.

38.       Chen Shuangyan, et al. Transcriptome analysis in sheepgrass (Leymus chinensis): a dominant perennial grass of the Eurasian Steppe. PLoS One. 2013; 8(7):e67974.

39.       Zheng Huajun, et al. The genome of the hydatid tapeworm Echinococcus granulosus. Nat Genet. 2013; 45(10): 1168-1175.

40.       Yan Xing, et al. Discovery of (hemi-) cellulase genes in a metagenomic library from a biogas digester using 454 pyrosequencing. Appl Microbiol Biotechnol. 2013; 97(18):8173-82.

41.       Sun Gang,et al. Dynamic population changes in Mycobacterium tuberculosis during acquisition and fixation of drug resistance in patients. J Infect Dis. 2012, 206(11):1724-33.

42.       Lei Fang, et al. Higher-level production of volatile fatty acids in vitro by chicken gut microbiotas than by human gut microbiotas as determined by functional analyses. Appl Environ Microbiol. 2012; 78(16):5763-72.

43.       Guo Junjie, et al. Sensitive and Specific Target Sequences Selected from Retrotransposons of Schistosoma japonicum for the Diagnosis of Schistosomiasis. PLoS Negl Trop Dis. 2012; 6(3): e1579.

44.       Xie Lei, et al. Profiling the metatranscriptome of the protistan community in Coptotermes formosanus with emphasis on the lignocellulolytic system. Genomics. 2012; 99(4):246-55.

45.       Zhong Yi, et al. Comparative proteogenomic analysis of the Leptospira interrogans virulence-attenuated strain IPAV against the pathogenic strain 56601. Cell Res. 2011; 21(8):1210-29.

46.       Guo Li, et al. Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol. 2011; 193(7):1672-80.

47.       Mi Shuang, et al. Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation. J Microbiol. 2011; 49(6):890-901.

48.       On On Lee, et al. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. ISME J. 2011; 5(4): 650–664.

49.       Chen Yanfei, et al. Characterization of fecal microbial communities in patients with liver cirrhosis. Hepatology. 2011; 54(2):562-72.

50.       Zheng Huajun, et al. Global identification of transcription start sites in the genome of Apis mellifera using 5'LongSAGE. J Exp Zool B Mol Dev Evol.2011; 316(7)：500-514.

51.       Chen Yafeng, et al. Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome. Virology. 2011; 414(1):42-50.

52.       Liu Ning, et al. Microbiome of fungus-growing termites: a new reservoir for lignocellulase genes. Appl Environ Microbiol. 2011; 77(1):48-56.

53.       Dong Hui, et al. Digital karyotyping reveals probable target genes at 7q21.3 locus in hepatocellular carcinoma. BMC Med Genomics. 2011; 4: 60.

54.       Zhao Wei, et al. Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Res. 2010;20(10):1096-108.

55.       Zhang Fujing, et al. Massively parallel pyrosequencing-based transcriptome analyses of small brown planthopper (Laodelphax striatellus), a vector insect transmitting rice stripe virus (RSV). BMC Genomics. 2010; 11:303.

56.       Zhang Chenhong, et al. Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice. ISME J. 2010; 4(2):232-41.

57.       Ling Zongxin, et al. Analysis of oral microbiota in children with dental caries by PCR-DGGE and barcoded pyrosequencing. Microb Ecol. 2010; 60(3):677-90.

58.       Ma Yingfei, et al. The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. Appl Environ Microbiol. 2009;75(21):6812-9.

59.       Li Min, et al. Molecular diversity of Bacteroides spp. in human fecal microbiota as determined by group-specific 16S rRNA gene clone library analysis. Syst Appl Microbiol. 2009; 32(3):193-200.

60.       Zhou Yan, et al. The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature. 2009; 460(7253):345-51.

61.       Brejová B, et al. Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence. Nucleic Acids Res. 2009; 37(7):e52.

62.       Li Min, et al. Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci U S A. 2008; 105(6):2117-22.

63.       Chutiwitoonchai N, et al. Opisthorchis viverrini: Gene expression profiling of carcinogenic adult liver fluke worms using 5' SAGE. Exp Parasitol. 2008; 120(4):306-13.

64.       Ren Wuze, et al. Full-length genome sequences of two SARS-like coronaviruses in horseshoe bats and genetic variation analysis. J Gen Virol. 2006; 87(Pt 11):3355-9.

65.       Qian Wei, et al. Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris. Genome Res. 2005; 15(6):757-67.

66.       Song Huaidong, et al. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci U S A. 2005; 102(7):2430-5.

67.       Chinese SARS Molecular Epidemiology Consortium. Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China. Science. 2004; 303(5664):1666-9.

68.       Watanabe H, et al. DNA sequence and comparative analysis of chimpanzee chromosome 22. Nature. 2004; 429(6990):382-8.

69.       Zhang Yueqing, et al. Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Molecular Microbiology. 2003; 49(6): 1577–1593.

70.        Ren Shuangxi, et al. Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing. Nature. 2003; 422(6934):888-93.

71.       Feng Qi, et al. Sequence and analysis of rice chromosome 4. Nature. 2002; 420(6913):316-20.

72.       Zhao Qiang, et al. A fine physical map of the rice chromosome 4. Genome Res. 2002; 12(5):817-23.