Additional Files Download

Additional File 1:Subpathway Pattern Data[download]
Additional File 2:Subpathway Pattern Figure[download]
Additional File 3:Pathway Comparison between JL03 and Yeast[download]
Additional File 4:TCA cycle Pattern in Pasteurellaceae and Chlamydiaceae[download]

Software Download

• treeParser [tar.gz] [ZIP] size:1K


treeParser was emploryed to obtain the sepcies relative distance to the query species,where the relative distance whill be used for identifying the target orthologous gene.


• GAPMap version1 [ZIP] size:16K


GAPMap can automatically generate the geonome annotation results which include genome-scalar protein/gene function ,biological pathway mapping/reconstruction and pathway comparison betweem species based on KEGG Ortholog(KO)

Manual Download

Manual PDF[PDF]
Manual DOC[DOC]

Essential Dataset for the software

• Data for GAPMap [tar.gz] size: 53.6M


The dataset includes metabolic sub-pathway parsed via reconstructed metabolic network and pathway dataset from KEGG pathway database,reaction and compound dataset from Kegg Ligand Database,ko dataset from KEGG gene database,and processed organism information from KEGG.
• KEGG gene Database


KEGG gene database is needed for BLAST.
FTP Site:ftp://ftp.genome.jp/pub/kegg/genes/fasta/
• NCBI Taxonomy Database


FTP Site:ftp://ftp.ncbi.nih.gov/pub/taxonomy/